C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type V, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000374866 COL5A2-001 ENSG00000204262 9606 - 2:189031896-189179879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374866
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374866 10.323±0.00 3.680±0.00 0.527±0.00 0.980±0.17 18.175±5.97 2.393±1.64 2.282±1.19 2.735±0.42 5.045±3.89 3.784±2.37 0.206±0.00 6.055±3.36 10.585±4.66 3.239±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J6 CIL_0004J6_0001 CGP 2:188974320-189179879
CIL_0000Q1 CIL_0000Q1_0001 CGP 2:189031896-189475565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IEA skeletal system development
GO:0001503 IEA ossification
GO:0003674 ND molecular_function
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005588 IMP collagen type V trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030199 ISS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0031012 NAS extracellular matrix
GO:0043588 ISS skin development
GO:0046332 IEA SMAD binding
GO:0046872 IEA metal ion binding
GO:0048592 IMP eye morphogenesis
GO:0071230 IEA cellular response to amino acid stimulus
GO:1903225 IDA negative regulation of endodermal cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086430 Col5a2-001 protein_coding Mus_musculus 0 6386
ENSMUST00000134681 Col5a2-002 retained_intron Mus_musculus 0 1587
ENSMUST00000150143 Col5a2-003 retained_intron Mus_musculus 0 523

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