C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF3 regulator of nonsense transcripts homolog A (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375299 UPF3A-001 ENSG00000169062 9606 + 13:114281584-114305817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000375299
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000375299 2.650±0.00 3.796±0.00 0.471±0.00 3.829±2.86 1.746±1.41 1.068±0.00 0.503±0.38 0.314±0.00 0.716±0.19 0.685±0.00 3.380±1.35 2.920±0.48 11.905±2.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001ED CIL_0001ED_0001 CGP 13:114234887-114305817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000184 NAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005487 NAS nucleocytoplasmic transporter activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006913 NAS nucleocytoplasmic transport
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035145 TAS exon-exon junction complex
GO:0045727 IDA positive regulation of translation
GO:0051028 IEA mRNA transport

Homologs

No Homologs available.

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