C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375340 SMC1A-201 ENSG00000072501 9606 - X:53374149-53422728 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0007064 IEA mitotic sister chromatid cohesion
GO:0008280 IEA cohesin core heterodimer
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045312 Smc1a-001 protein_coding Mus_musculus 0 5114
ENSDART00000081016 smc1al-001 protein_coding Danio_rerio 0 2394
ENSMUST00000145518 Smc1a-002 nonsense_mediated_decay Mus_musculus 0 2206
ENSMUST00000124681 Smc1a-006 retained_intron Mus_musculus 0 468
ENSMUST00000141457 Smc1a-005 retained_intron Mus_musculus 0 459
ENSMUST00000135172 Smc1a-003 retained_intron Mus_musculus 0 364
ENSMUST00000131395 Smc1a-004 retained_intron Mus_musculus 0 335

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