C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1A, like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000081016 smc1al-001 ENSDARG00000058203 7955 + 23:12952070-13009566 protein_coding

Danio rerio EnsemblZv9

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000081016
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000081016 17.157±2.40 22.021±6.16 15.701±2.97 0.684±0.00 6.064±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0051276 IEA chromosome organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045312 Smc1a-001 protein_coding Mus_musculus 0 2388
ENSMUST00000124681 Smc1a-006 retained_intron Mus_musculus 0 270
ENSMUST00000141457 Smc1a-005 retained_intron Mus_musculus 0 270
ENSMUST00000145518 Smc1a-002 nonsense_mediated_decay Mus_musculus 0 1177
ENST00000322213 SMC1A-001 protein_coding Homo_sapiens 0 2447
ENST00000375340 SMC1A-201 protein_coding Homo_sapiens 0 2394

Loading