C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045312 Smc1a-001 ENSMUSG00000041133 10090 + X:152016428-152062694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045312
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045312 9.165±2.34 4.413±0.55 7.266±0.02 15.461±3.75 8.169±1.51 5.245±0.41 4.444±0.60 5.912±0.28 13.930±10.74 9.954±1.73 2.608±0.33 13.272±7.22 14.598±8.18 1.008±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001B1 CIL_0001B1_0002 CGP X:152004582-152062694

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 ISS kinetochore
GO:0003682 ISS chromatin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0007062 IEA sister chromatid cohesion
GO:0007064 IEA mitotic sister chromatid cohesion
GO:0007093 ISS mitotic cell cycle checkpoint
GO:0007126 ISS meiotic nuclear division
GO:0008280 IEA cohesin core heterodimer
GO:0009314 ISS response to radiation
GO:0019827 IMP stem cell maintenance
GO:0030893 ISS meiotic cohesin complex
GO:0032876 IEA negative regulation of DNA endoreduplication
GO:0036033 IDA mediator complex binding
GO:0042770 ISS signal transduction in response to DNA damage
GO:0044822 IEA poly(A) RNA binding
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081016 smc1al-001 protein_coding Danio_rerio 0 2388
ENST00000322213 SMC1A-001 protein_coding Homo_sapiens 0 5350
ENST00000375340 SMC1A-201 protein_coding Homo_sapiens 0 5114
ENST00000428014 SMC1A-003 protein_coding Homo_sapiens 0 1062
ENST00000463684 SMC1A-002 nonsense_mediated_decay Homo_sapiens 0 955
ENST00000469129 SMC1A-004 processed_transcript Homo_sapiens 0 436
ENST00000470241 SMC1A-005 protein_coding Homo_sapiens 0 1072

Loading