C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIH, polypeptide 4, 52kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376316 GTF2H4-002 ENSG00000213780 9606 + 6:30908221-30914106 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverMusclePlacentaTestisENST00000376316
Transcript ID Breast Colon Kidney Liver Muscle Placenta Testis
ENST00000376316 5.140±0.00 6.184±0.00 9.092±0.00 6.437±0.00 4.402±0.00 3.691±0.00 4.543±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000439 IEA core TFIIH complex
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0004672 IDA protein kinase activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005675 IDA holo TFIIH complex
GO:0006200 IDA ATP catabolic process
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS:IEA nucleotide-excision repair
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006370 TAS 7-methylguanosine mRNA capping
GO:0006468 IDA protein phosphorylation
GO:0008094 IDA DNA-dependent ATPase activity
GO:0008353 IDA RNA polymerase II carboxy-terminal domain kinase activity
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0032508 IEA DNA duplex unwinding
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001565 Gtf2h4-001 protein_coding Mus_musculus 0 1973
ENSMUST00000160734 Gtf2h4-003 protein_coding Mus_musculus 0 1923
ENSMUST00000160752 Gtf2h4-008 nonsense_mediated_decay Mus_musculus 0 1899
ENSMUST00000160535 Gtf2h4-011 retained_intron Mus_musculus 0 809
ENSMUST00000162894 Gtf2h4-010 retained_intron Mus_musculus 0 675
ENSMUST00000160039 Gtf2h4-009 protein_coding Mus_musculus 0 656
ENSMUST00000159671 Gtf2h4-004 retained_intron Mus_musculus 0 364
ENSMUST00000162266 Gtf2h4-006 protein_coding Mus_musculus 0 364
ENSMUST00000162604 Gtf2h4-005 retained_intron Mus_musculus 0 315
ENSMUST00000162927 Gtf2h4-012 retained_intron Mus_musculus 0 274
ENSMUST00000159852 Gtf2h4-007 protein_coding Mus_musculus 0 244
ENSMUST00000160711 Gtf2h4-002 processed_transcript Mus_musculus 0 193

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