C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha tubulin acetyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376483 ATAT1-003 ENSG00000137343 9606 + 6:30626876-30644679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000376483
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000376483 0.285±0.00 1.373±0.00 0.054±0.00 1.405±1.16 0.617±0.21 0.432±0.00 0.377±0.00 2.773±0.00 0.478±0.00 0.416±0.29 2.858±1.35 0.182±0.00 5.044±3.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005905 IEA coated pit
GO:0019799 IMP:IEA tubulin N-acetyltransferase activity
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection
GO:0048666 IEA neuron development
GO:0050662 IDA coenzyme binding
GO:0070507 IEA regulation of microtubule cytoskeleton organization
GO:0071929 IDA:IEA alpha-tubulin acetylation
GO:0072686 IDA mitotic spindle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000149277 Atat1-003 protein_coding Mus_musculus 0 1190
ENSMUST00000061052 Atat1-001 protein_coding Mus_musculus 0 1188
ENSMUST00000141662 Atat1-004 protein_coding Mus_musculus 0 1186
ENSMUST00000056034 Atat1-005 protein_coding Mus_musculus 0 743
ENSMUST00000077494 Atat1-002 protein_coding Mus_musculus 0 743
ENSMUST00000127959 Atat1-007 processed_transcript Mus_musculus 0 676
ENSMUST00000141132 Atat1-009 protein_coding Mus_musculus 0 652
ENSMUST00000140990 Atat1-006 retained_intron Mus_musculus 0 627
ENSMUST00000137069 Atat1-010 processed_transcript Mus_musculus 0 556
ENSMUST00000137182 Atat1-008 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000130309 Atat1-012 retained_intron Mus_musculus 0 414
ENSMUST00000126744 Atat1-013 nonsense_mediated_decay Mus_musculus 0 407
ENSMUST00000151009 Atat1-011 retained_intron Mus_musculus 0 281
ENSMUST00000140292 Atat1-014 protein_coding Mus_musculus 0 281
ENSMUST00000174436 Atat1-016 retained_intron Mus_musculus 0 246

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