C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: visual system homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376709 VSX1-001 ENSG00000100987 9606 - 20:25075436-25082365 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartOvaryPlacentaTestisENST00000376709
Transcript ID Adipose Breast Colon Heart Ovary Placenta Testis
ENST00000376709 0.023±0.00 0.007±0.00 0.070±0.05 0.007±0.00 0.019±0.00 0.026±0.00 0.024±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023G CIL_00023G_0001 CGP 20:25006230-25082365
CIL_0004MS CIL_0004MS_0002 CGP 20:25070885-25226729

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0042551 IEA neuron maturation
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IEA neuron development
GO:0050896 IEA response to stimulus
GO:0060040 IEA retinal bipolar neuron differentiation

Homologs

No Homologs available.

Loading