C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermidine synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000376957 SRM-001 ENSG00000116649 9606 - 1:11054589-11060024 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000376957
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000376957 40.006±0.00 80.146±0.00 1.320±0.00 20.190±16.32 22.978±21.49 22.480±21.74 19.309±0.00 20.691±18.45 20.611±19.42 14.343±12.91 31.298±26.63 48.242±32.14 39.713±19.54 38.788±29.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004766 IDA spermidine synthase activity
GO:0005829 TAS cytosol
GO:0006595 TAS polyamine metabolic process
GO:0008295 IEA spermidine biosynthetic process
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042803 IDA protein homodimerization activity
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000006611 Srm-001 protein_coding Mus_musculus 0 1205
ENSMUST00000152701 Srm-002 retained_intron Mus_musculus 0 870
ENSMUST00000140129 Srm-003 processed_transcript Mus_musculus 0 239

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