C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377244 SNX15-001 ENSG00000110025 9606 + 11:65027408-65040572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000377244
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000377244 10.210±0.00 0.991±0.00 5.043±2.60 13.218±0.00 1.117±0.00 6.693±0.00 8.894±8.21 2.664±0.50 3.874±2.52 12.171±0.00 14.033±10.16 10.597±2.40

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 NAS cytosol
GO:0006886 NAS intracellular protein transport
GO:0016020 NAS membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0035091 IEA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025702 Snx15-001 protein_coding Mus_musculus 0 1035
ENSMUST00000154601 Snx15-002 protein_coding Mus_musculus 0 719
ENSMUST00000124964 Snx15-003 processed_transcript Mus_musculus 0 688
ENSMUST00000129076 Snx15-004 retained_intron Mus_musculus 9.80909e-45 185
ENSMUST00000124171 Snx15-007 retained_intron Mus_musculus 0 213

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