C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377294 ZKSCAN4-001 ENSG00000187626 9606 - 6:28244623-28252224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377294
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377294 0.726±0.00 2.380±0.00 0.327±0.00 1.365±0.00 0.946±0.43 0.686±0.25 0.418±0.08 0.983±0.70 0.598±0.14 0.552±0.15 0.252±0.00 1.408±0.34 1.532±0.19 5.776±0.49

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000070785 Zkscan3-003 protein_coding Mus_musculus 0 1153
ENSMUST00000116434 Zkscan3-001 protein_coding Mus_musculus 0 1153
ENSMUST00000062609 Zkscan4-001 protein_coding Mus_musculus 0 798
ENSMUST00000117721 Zkscan3-004 protein_coding Mus_musculus 0 420
ENSMUST00000116433 Zkscan3-002 protein_coding Mus_musculus 0 420
ENSMUST00000076238 Gm10065-201 protein_coding Mus_musculus 0 252
ENSMUST00000099720 Zscan12-002 protein_coding Mus_musculus 0 213
ENSMUST00000053293 Zscan12-001 protein_coding Mus_musculus 0 213
ENSMUST00000110485 Zscan26-001 protein_coding Mus_musculus 2e-37 161
ENSMUST00000161896 Zkscan5-003 nonsense_mediated_decay Mus_musculus 4e-30 137
ENSMUST00000031601 Zkscan5-002 protein_coding Mus_musculus 4e-30 137
ENSMUST00000085671 Zkscan5-001 protein_coding Mus_musculus 4e-30 137
ENSMUST00000110481 Zkscan8-002 protein_coding Mus_musculus 2e-28 132
ENSMUST00000156674 Zkscan8-003 protein_coding Mus_musculus 2e-28 132
ENSMUST00000045228 Zkscan8-001 protein_coding Mus_musculus 2e-28 132
ENSMUST00000094116 Zscan25-201 protein_coding Mus_musculus 2e-23 115
ENSMUST00000074941 Zfp35-001 protein_coding Mus_musculus 2e-18 99
ENSMUST00000073924 2810021J22Rik-001 protein_coding Mus_musculus 0.00000000003 75
ENSMUST00000180016 Zfp62-202 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000061757 Zfp62-201 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000136539 Zfp62-010 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000109197 Zfp62-008 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000109198 Zfp62-001 protein_coding Mus_musculus 0.0000000004 71
ENSMUST00000139337 Gm12258-001 protein_coding Mus_musculus 0.0002 53

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