C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-like modifier activating enzyme 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377351 UBA1-002 ENSG00000130985 9606 + X:47190861-47215128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverOvaryPlacentaTestisENST00000377351
Transcript ID Brain Colon Liver Ovary Placenta Testis
ENST00000377351 2.618±0.00 2.001±0.00 6.694±0.00 40.786±11.01 21.614±10.63 31.395±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005G9 CIL_0005G9_0001 CGP X:47144869-47215128
CIL_0005G8 CIL_0005G8_0001 CGP X:47190861-47229997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000792 IDA heterochromatin
GO:0003824 IEA catalytic activity
GO:0004839 IBA ubiquitin activating enzyme activity
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005765 IDA lysosomal membrane
GO:0005829 IBA cytosol
GO:0006464 IEA cellular protein modification process
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0008219 IEA cell death
GO:0008641 IEA small protein activating enzyme activity
GO:0010008 IDA endosome membrane
GO:0016567 IBA protein ubiquitination
GO:0019941 IBA modification-dependent protein catabolic process
GO:0030057 IDA desmosome
GO:0030867 IDA rough endoplasmic reticulum membrane
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089217 Uba1-001 protein_coding Mus_musculus 0 4132
ENSMUST00000001989 Uba1-002 protein_coding Mus_musculus 0 4041
ENSMUST00000190013 Uba1y-001 protein_coding Mus_musculus 0 2796
ENSMUST00000115894 Uba1y-201 protein_coding Mus_musculus 0 2795
ENSMUST00000190871 RP24-453P17.2-001 unprocessed_pseudogene Mus_musculus 0 1487
ENSMUST00000189146 RP24-498K8.1-001 unprocessed_pseudogene Mus_musculus 0 1439
ENSMUST00000190440 RP24-453P17.3-001 unprocessed_pseudogene Mus_musculus 0 1155
ENSMUST00000189153 RP24-1D8.5-001 unprocessed_pseudogene Mus_musculus 0 965
ENSMUST00000137892 Uba1-005 processed_transcript Mus_musculus 0 911
ENSMUST00000136915 Uba1-006 processed_transcript Mus_musculus 0 789
ENSMUST00000190809 RP24-525E22.1-001 unprocessed_pseudogene Mus_musculus 0 785
ENSMUST00000152235 Uba1-003 processed_transcript Mus_musculus 0 760
ENSMUST00000187264 RP24-92P14.5-001 unprocessed_pseudogene Mus_musculus 0 697
ENSMUST00000188314 RP24-92P14.3-001 unprocessed_pseudogene Mus_musculus 0 697
ENSMUST00000130694 Uba1-004 processed_transcript Mus_musculus 0 597
ENSMUST00000185543 RP24-312B8.1-001 unprocessed_pseudogene Mus_musculus 0 259

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