C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: protocadherin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377865 PCDH9-003 ENSG00000184226 9606 - 13:66302834-67229818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverTestisENST00000377865
Transcript ID Breast Kidney Liver Testis
ENST00000377865 0.421±0.00 0.774±0.00 0.081±0.00 0.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HT CIL_0008HT_0001 VISTA 13:65735667-66336616

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030426 IEA growth cone
GO:0030900 IEA forebrain development
GO:0044291 IEA cell-cell contact zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000068992 Pcdh9-201 protein_coding Mus_musculus 0 5319

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