C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068992 Pcdh9-201 ENSMUSG00000055421 10090 - 14:93015512-93888732 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068992
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068992 0.165±0.13 0.289±0.10 4.018±0.39 0.117±0.04 0.266±0.10 0.323±0.08 0.135±0.05 0.025±0.01 0.086±0.02 0.031±0.01 0.843±0.27 0.038±0.01 0.883±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0030426 IDA growth cone
GO:0044291 IDA cell-cell contact zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377861 PCDH9-002 protein_coding Homo_sapiens 0 4335
ENST00000377865 PCDH9-003 protein_coding Homo_sapiens 0 5319
ENST00000456367 PCDH9-004 protein_coding Homo_sapiens 0 4451
ENST00000544246 PCDH9-001 protein_coding Homo_sapiens 0 4335
ENST00000614931 PCDH9-005 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000617020 PCDH9-006 processed_transcript Homo_sapiens 0 560

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