C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379965 TRIM22-001 ENSG00000132274 9606 + 11:5689689-5710863 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000379965
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000379965 11.308±0.00 3.423±0.00 2.506±0.00 13.821±0.00 2.864±0.00 2.660±1.28 5.324±4.08 20.150±4.72 0.951±0.17 4.943±2.17 2.740±1.07 2.901±0.54

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006955 TAS immune response
GO:0008270 IEA zinc ion binding
GO:0009615 TAS response to virus
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0043123 IDA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046872 IEA metal ion binding
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051092 IDA positive regulation of NF-kappaB transcription factor activity
GO:0051607 IEA defense response to virus
GO:0070206 IDA protein trimerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051795 Trim5-201 protein_coding Mus_musculus 0.00005 55
ENSMUST00000098179 Trim5-001 protein_coding Mus_musculus 0.00005 55
ENSMUST00000138557 Trim5-002 nonsense_mediated_decay Mus_musculus 0.00005 55
ENSMUST00000059037 Trim12c-001 protein_coding Mus_musculus 0.00005 55

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