C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 9 open reading frame 72
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379995 C9orf72-005 ENSG00000147894 9606 - 9:27561549-27573755 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungENST00000379995
Transcript ID Brain Breast Colon Heart Kidney Lung
ENST00000379995 5.033±0.00 2.343±0.00 1.540±0.00 1.103±0.00 2.288±0.00 8.406±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061J CIL_00061J_0001 CGP 9:27524314-27573866
CIL_00061K CIL_00061K_0001 CGP 9:27546545-28670286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005764 IDA lysosome
GO:0005768 IDA endosome
GO:0005776 IDA autophagic vacuole
GO:0006897 IMP endocytosis
GO:0006914 IMP autophagy
GO:0008219 IEA cell death
GO:0017137 IDA Rab GTPase binding
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156472 3110043O21Rik-003 retained_intron Mus_musculus 0 941
ENSMUST00000108127 3110043O21Rik-001 protein_coding Mus_musculus 0 918
ENSMUST00000084724 3110043O21Rik-007 protein_coding Mus_musculus 0 918
ENSMUST00000130538 3110043O21Rik-004 processed_transcript Mus_musculus 0 603
ENSMUST00000149138 3110043O21Rik-005 processed_transcript Mus_musculus 0 385

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