C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147894-ENSG00000174482 CGP 9606 9:27546545-28670286
GeneTranscriptPositionBiotype
ENSG00000147894 (C9orf72)
chromosome 9 open reading frame 72 		ENST00000379995 (C9orf72-005) 27561549-27573755 protein_coding
ENST00000379997 (C9orf72-003) 27560501-27573866 protein_coding
ENST00000380003 (C9orf72-001) 27546546-27573450 protein_coding
ENST00000461679 (C9orf72-004) 27561590-27573866 processed_transcript
ENST00000488117 (C9orf72-002) 27546555-27573448 processed_transcript
ENST00000619707 (C9orf72-201) 27546545-27573866 protein_coding
ENSG00000174482 (LINGO2)
leucine rich repeat and Ig domain containing 2 		ENST00000308675 (LINGO2-201) 27948086-28670285 protein_coding
ENST00000379992 (LINGO2-001) 27948078-28670285 protein_coding
ENST00000493941 (LINGO2-002) 28080605-28295331 processed_transcript
ENST00000613945 (LINGO2-202) 27948086-28670286 protein_coding
ENSG00000215441 (CTAGE12P)
CTAGE family, member 12, pseudogene 		ENST00000400348 (CTAGE12P-001) 27608382-27610745 processed_pseudogene
ENSG00000224955 (KCTD10P1)
potassium channel tetramerization domain containing 10 pseudogene 1 		ENST00000434203 (KCTD10P1-001) 28598668-28599292 processed_pseudogene
ENSG00000229060 (RP11-20P5.2)
 ENST00000478520 (RP11-20P5.2-001) 28148211-28149236 processed_pseudogene
ENSG00000260390 (RP11-575I8.1)
 ENST00000562922 (RP11-575I8.1-001) 27829276-27844481 lincRNA
ENSG00000260412 (RP11-438B23.2)
 ENST00000566293 (RP11-438B23.2-001) 27937617-27944497 sense_overlapping

Homo sapiens Ensembl (GRCh38)

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CIL_00061K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028300-ENSMUSG00000045083 CGP 10090 4:35191285-36951747
GeneTranscriptPositionBiotype
ENSMUSG00000028300 (3110043O21Rik)
RIKEN cDNA 3110043O21 gene 		ENSMUST00000084724 (3110043O21Rik-007) 35191285-35226123 protein_coding
ENSMUST00000108126 (3110043O21Rik-002) 35191287-35225834 protein_coding
ENSMUST00000108127 (3110043O21Rik-001) 35191287-35225880 protein_coding
ENSMUST00000130538 (3110043O21Rik-004) 35218409-35226123 processed_transcript
ENSMUST00000142628 (3110043O21Rik-006) 35197044-35206130 retained_intron
ENSMUST00000149138 (3110043O21Rik-005) 35218593-35226123 processed_transcript
ENSMUST00000156472 (3110043O21Rik-003) 35212423-35226175 retained_intron
ENSMUSG00000045083 (Lingo2)
leucine rich repeat and Ig domain containing 2 		ENSMUST00000065173 (Lingo2-003) 35707406-35845204 protein_coding
ENSMUST00000098151 (Lingo2-002) 35707406-36136463 protein_coding
ENSMUST00000108122 (Lingo2-001) 35707406-36951223 protein_coding
ENSMUST00000108124 (Lingo2-201) 35707843-36056726 protein_coding
ENSMUST00000124999 (Lingo2-005) 36056724-36950486 processed_transcript
ENSMUST00000125128 (Lingo2-007) 36951100-36951747 processed_transcript
ENSMUST00000127372 (Lingo2-006) 36718557-36950467 processed_transcript
ENSMUST00000144170 (Lingo2-004) 36718802-36950489 processed_transcript
ENSMUST00000145615 (Lingo2-008) 36715820-36951744 processed_transcript
ENSMUST00000164772 (Lingo2-202) 35706647-35845204 protein_coding
ENSMUSG00000082169 (Gm12369)
predicted gene 12369 		ENSMUST00000121343 (Gm12369-001) 36003238-36004179 processed_pseudogene
ENSMUSG00000082762 (Gm12366)
predicted gene 12366 		ENSMUST00000121722 (Gm12366-001) 35202103-35202975 processed_pseudogene
ENSMUSG00000083851 (Gm12365)
predicted gene 12365 		ENSMUST00000117931 (Gm12365-001) 35436214-35436781 processed_pseudogene
ENSMUSG00000083934 (Gm12368)
predicted gene 12368 		ENSMUST00000122251 (Gm12368-001) 35401058-35401491 processed_pseudogene
ENSMUSG00000084352 (Gm12370)
predicted gene 12370 		ENSMUST00000117809 (Gm12370-001) 36444070-36444875 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061K_0001ENSG00000147894ENST00000379995ENST00000379997ENST00000380003ENST00000461679ENST00000488117ENST00000619707ENSG00000174482ENST00000308675ENST00000379992ENST00000493941ENST00000613945ENSG00000215441ENST00000400348ENSG00000224955ENST00000434203ENSG00000229060ENST00000478520ENSG00000260390ENST00000562922ENSG00000260412ENST00000566293CIL_00061K_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061K_0001ENSG00000147894ENST00000379995ENST00000379997ENST00000380003ENST00000461679ENST00000488117ENST00000619707ENSG00000174482ENST00000308675ENST00000379992ENST00000493941ENST00000613945ENSG00000215441ENST00000400348ENSG00000224955ENST00000434203ENSG00000229060ENST00000478520ENSG00000260390ENST00000562922ENSG00000260412ENST00000566293CIL_00061K_0002ENSMUSG00000028300ENSMUST00000084724ENSMUST00000108126ENSMUST00000108127ENSMUST00000149138ENSMUSG00000045083ENSMUST00000065173ENSMUST00000098151ENSMUST00000108122ENSMUST00000108124ENSMUST00000124999ENSMUST00000125128ENSMUST00000145615ENSMUST00000164772ENSMUSG00000082169ENSMUST00000121343ENSMUSG00000082762ENSMUST00000121722ENSMUSG00000083851ENSMUST00000117931ENSMUSG00000083934ENSMUST00000122251ENSMUSG00000084352ENSMUST00000117809
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147894 ENST00000379995 N/A N/A N/A 5.033±0.00 2.343±0.00 1.540±0.00 1.103±0.00 2.288±0.00 N/A 8.406±0.00 N/A N/A N/A N/A
ENST00000379997 0.703±0.00 N/A N/A 4.391±0.00 N/A 0.573±0.00 N/A N/A N/A N/A N/A N/A 0.494±0.00 N/A
ENST00000380003 1.786±0.00 1.287±0.00 0.561±0.00 1.999±0.66 1.917±0.23 0.554±0.12 1.256±0.80 1.417±0.42 1.028±0.10 3.667±0.00 2.083±0.00 1.745±0.48 1.883±0.24 3.959±1.19
ENST00000461679 N/A N/A N/A N/A N/A N/A 1.551±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000488117 0.351±0.00 N/A N/A 0.954±0.18 0.241±0.00 0.193±0.00 0.260±0.00 0.265±0.00 0.776±0.65 2.390±0.00 N/A 0.625±0.18 N/A N/A
ENST00000619707 N/A N/A N/A N/A N/A 1.083±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000174482 ENST00000308675 N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.378±0.00 N/A
ENST00000379992 N/A N/A N/A 1.433±0.40 N/A N/A 0.008±0.00 0.147±0.00 N/A N/A N/A 0.125±0.02 0.137±0.00 1.122±0.00
ENST00000493941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.957±0.00
ENST00000613945 0.009±0.00 N/A 0.055±0.00 0.357±0.00 0.049±0.00 0.120±0.00 0.016±0.00 N/A 0.206±0.00 0.077±0.00 N/A 0.150±0.00 0.137±0.00 N/A
ENSG00000215441 ENST00000400348 N/A 0.018±0.00 N/A 0.004±0.00 0.038±0.00 N/A 0.013±0.01 N/A 0.008±0.00 N/A N/A 0.056±0.05 N/A 0.012±0.01
ENSG00000224955 ENST00000434203 N/A N/A N/A 0.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSG00000229060 ENST00000478520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.44
ENSG00000260390 ENST00000562922 N/A 0.034±0.00 N/A 0.005±0.00 N/A 0.100±0.00 N/A N/A N/A 0.214±0.00 N/A N/A 0.119±0.08 0.045±0.01
ENSG00000260412 ENST00000566293 0.014±0.00 0.031±0.00 0.022±0.00 1.016±0.02 0.013±0.00 0.042±0.00 0.006±0.00 0.044±0.00 0.015±0.01 0.025±0.00 0.012±0.00 0.023±0.01 0.031±0.02 0.048±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028300 ENSMUST00000084724 N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.00 N/A N/A 0.727±0.17 N/A N/A
ENSMUST00000108126 12.725±6.31 1.903±0.41 2.046±0.10 6.351±0.38 8.753±4.57 0.776±0.09 2.920±0.78 1.196±0.45 1.088±0.39 2.186±0.65 0.965±0.28 3.794±2.40 0.947±0.29 2.354±0.56
ENSMUST00000108127 11.401±4.59 1.418±0.28 3.893±0.32 7.970±2.29 4.353±1.32 1.857±0.58 4.115±0.97 2.311±0.55 1.704±0.60 3.170±1.05 3.406±0.80 3.381±1.66 2.430±1.04 3.048±0.95
ENSMUST00000130538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142628 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149138 N/A 1.930±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045083 ENSMUST00000065173 N/A 0.056±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.036±0.03 N/A N/A
ENSMUST00000098151 N/A N/A N/A N/A N/A N/A N/A 0.045±0.01 0.001±0.00 N/A N/A 0.095±0.08 N/A N/A
ENSMUST00000108122 N/A N/A 0.006±0.00 1.880±1.09 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.012±0.00 0.036±0.00
ENSMUST00000108124 N/A N/A N/A 2.330±1.42 N/A 0.047±0.00 0.011±0.00 0.062±0.04 0.009±0.01 N/A N/A 0.075±0.06 0.011±0.01 0.046±0.03
ENSMUST00000124999 N/A N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 0.241±0.00 N/A 0.103±0.00 N/A N/A
ENSMUST00000125128 N/A N/A 0.047±0.00 N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145615 N/A N/A 0.002±0.00 2.102±0.00 N/A N/A N/A 0.026±0.01 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUST00000164772 N/A N/A N/A 0.937±0.53 N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.007±0.00 0.010±0.00 N/A
ENSMUSG00000082169 ENSMUST00000121343 N/A N/A N/A 0.212±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082762 ENSMUST00000121722 96.198±24.63 17.383±12.13 1.723±1.22 4.653±0.78 101.877±45.28 63.552±18.15 39.717±2.52 40.147±21.10 9.843±7.84 55.248±6.38 1.286±0.59 121.132±91.18 0.214±0.14 10.242±1.15
ENSMUSG00000083851 ENSMUST00000117931 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083934 ENSMUST00000122251 N/A N/A N/A 0.069±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084352 ENSMUST00000117809 N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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