C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromosome 9 open reading frame 72
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380003 C9orf72-001 ENSG00000147894 9606 - 9:27546546-27573450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380003
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380003 1.786±0.00 1.287±0.00 0.561±0.00 1.999±0.66 1.917±0.23 0.554±0.12 1.256±0.80 1.417±0.42 1.028±0.10 3.667±0.00 2.083±0.00 1.745±0.48 1.883±0.24 3.959±1.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061J CIL_00061J_0001 CGP 9:27524314-27573866
CIL_00061K CIL_00061K_0001 CGP 9:27546545-28670286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005764 IDA lysosome
GO:0005768 IDA endosome
GO:0005776 IDA autophagic vacuole
GO:0006897 IMP endocytosis
GO:0006914 IMP autophagy
GO:0008219 IEA cell death
GO:0017137 IDA Rab GTPase binding
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108127 3110043O21Rik-001 protein_coding Mus_musculus 0 1914
ENSMUST00000084724 3110043O21Rik-007 protein_coding Mus_musculus 0 1629
ENSMUST00000108126 3110043O21Rik-002 protein_coding Mus_musculus 0 1317
ENSMUST00000156472 3110043O21Rik-003 retained_intron Mus_musculus 0 918
ENSMUST00000130538 3110043O21Rik-004 processed_transcript Mus_musculus 0 603
ENSMUST00000149138 3110043O21Rik-005 processed_transcript Mus_musculus 0 385

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