C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FUS RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380244 FUS-008 ENSG00000089280 9606 + 16:31180139-31191602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380244
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380244 28.320±0.00 57.799±0.00 45.999±0.00 21.945±0.00 15.275±0.00 26.663±0.00 35.378±0.00 7.087±0.00 13.545±0.00 16.012±0.00 100.859±24.86 83.972±21.99 62.960±26.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044X CIL_00044X_0002 CGP 16:31138925-31194871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0042802 IPI identical protein binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077609 Fus-007 protein_coding Mus_musculus 0 1997
ENSMUST00000106251 Fus-001 protein_coding Mus_musculus 0 1989
ENSMUST00000128851 Fus-002 retained_intron Mus_musculus 0 1144
ENSMUST00000118327 Gm7199-001 processed_pseudogene Mus_musculus 0 1059
ENSMUST00000150411 Gm10167-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000174196 Fus-011 retained_intron Mus_musculus 0 782
ENSMUST00000121616 Fus-004 protein_coding Mus_musculus 0 625
ENSMUST00000123151 Fus-003 retained_intron Mus_musculus 0 529
ENSMUST00000136289 Fus-005 retained_intron Mus_musculus 0 518
ENSMUST00000154843 Fus-009 processed_transcript Mus_musculus 0 475
ENSMUST00000141997 Fus-006 protein_coding Mus_musculus 0 418
ENSMUST00000155941 Fus-010 retained_intron Mus_musculus 0 375
ENSMUST00000137464 Fus-008 processed_transcript Mus_musculus 0 292
ENSMUST00000174632 Fus-013 protein_coding Mus_musculus 0 291
ENSMUST00000172755 Fus-012 retained_intron Mus_musculus 5.00264e-43 180

Loading