C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IV, alpha 3 (Goodpasture antigen) binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109444 Col4a3bp-202 ENSMUSG00000021669 10090 + 13:96542735-96640167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000109444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000109444 2.194±1.12 13.445±4.07 12.805±2.25 1.746±0.40 6.170±3.00 6.061±1.04 0.688±0.00 5.643±1.18 3.118±0.69 5.811±1.69 1.315±0.24 7.339±2.35 3.147±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XB CIL_0002XB_0003 CGP 13:96542618-96670936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001701 IMP in utero embryonic development
GO:0003007 IMP heart morphogenesis
GO:0005739 IDA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0005829 IDA cytosol
GO:0006672 IMP ceramide metabolic process
GO:0006936 IMP muscle contraction
GO:0007029 IMP endoplasmic reticulum organization
GO:0007165 IMP signal transduction
GO:0008283 IMP cell proliferation
GO:0016301 IDA kinase activity
GO:0016310 IDA phosphorylation
GO:0034976 IMP response to endoplasmic reticulum stress
GO:0035620 ISS ceramide transporter activity
GO:0035621 ISS ER to Golgi ceramide transport
GO:0055088 IMP lipid homeostasis
GO:0070584 IMP mitochondrion morphogenesis
GO:0097001 ISS ceramide binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261415 COL4A3BP-003 protein_coding Homo_sapiens 0 2784
ENST00000357457 COL4A3BP-007 protein_coding Homo_sapiens 0 979
ENST00000380494 COL4A3BP-001 protein_coding Homo_sapiens 0 2730
ENST00000405807 COL4A3BP-002 protein_coding Homo_sapiens 0 1779
ENST00000508692 COL4A3BP-006 processed_transcript Homo_sapiens 0 403
ENST00000508809 COL4A3BP-005 protein_coding Homo_sapiens 0 529
ENST00000604926 COL4A3BP-008 retained_intron Homo_sapiens 0 342

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