C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381020 CDX2-001 ENSG00000165556 9606 - 13:27962137-27971139 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryPlacentaTestisENST00000381020
Transcript ID Adrenal Breast Colon Lung Ovary Placenta Testis
ENST00000381020 0.025±0.00 1.280±1.25 3.518±2.09 0.055±0.00 1.642±0.83 0.011±0.00 0.021±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0001 VISTA 13:27444442-28045997
CIL_0007MT CIL_0007MT_0001 UCNEbase 13:27505095-28294517
CIL_00082E CIL_00082E_0001 VISTA 13:27521824-28123399
CIL_0004CK CIL_0004CK_0001 CGP 13:27962137-27988654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000794 IEA condensed nuclear chromosome
GO:0001568 IEA blood vessel development
GO:0001824 IEA blastocyst development
GO:0001829 IEA trophectodermal cell differentiation
GO:0001890 IEA placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 IEA transcription corepressor activity
GO:0005515 IEA protein binding
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 IEA multicellular organismal development
GO:0007389 IEA pattern specification process
GO:0008284 IEA positive regulation of cell proliferation
GO:0008333 IEA endosome to lysosome transport
GO:0009887 TAS organ morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0017053 IEA transcriptional repressor complex
GO:0030154 IEA cell differentiation
GO:0035019 IEA somatic stem cell maintenance
GO:0043234 IEA protein complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045197 IEA establishment or maintenance of epithelial cell apical/basal polarity
GO:0045597 IEA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0060711 IEA labyrinthine layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031650 Cdx2-001 protein_coding Mus_musculus 0 1363

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