C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: caudal type homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031650 Cdx2-001 ENSMUSG00000029646 10090 - 5:147300805-147307270 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonLiverLungOvaryPlacentaTestisENSMUST00000031650
Transcript ID Adrenal Bladder Colon Liver Lung Ovary Placenta Testis
ENSMUST00000031650 0.033±0.01 0.012±0.00 113.978±21.87 0.030±0.03 0.235±0.16 0.044±0.01 7.654±4.72 0.033±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008CO CIL_0008CO_0002 VISTA 5:146855041-147456530
CIL_00082E CIL_00082E_0002 VISTA 5:146922660-147524221
CIL_0007MT CIL_0007MT_0002 UCNEbase 5:146994099-147547626
CIL_0004CK CIL_0004CK_0002 CGP 5:147300805-147322440

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000794 IDA condensed nuclear chromosome
GO:0001568 IGI blood vessel development
GO:0001824 IMP blastocyst development
GO:0001829 IDA trophectodermal cell differentiation
GO:0001890 IGI placenta development
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007389 IMP pattern specification process
GO:0008284 IEA positive regulation of cell proliferation
GO:0008333 IMP endosome to lysosome transport
GO:0009952 IGI anterior/posterior pattern specification
GO:0017053 IDA transcriptional repressor complex
GO:0030154 IMP cell differentiation
GO:0035019 IMP somatic stem cell maintenance
GO:0043234 IDA protein complex
GO:0043565 IDA sequence-specific DNA binding
GO:0045197 IMP establishment or maintenance of epithelial cell apical/basal polarity
GO:0045597 IDA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0060711 IGI labyrinthine layer development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000081993 cdx1b-201 protein_coding Danio_rerio 3.00004e-41 174
ENST00000381020 CDX2-001 protein_coding Homo_sapiens 0 1363
ENST00000548877 CDX2-002 processed_transcript Homo_sapiens 0 514

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