C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, MYND-type containing 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381591 ZMYND11-003 ENSG00000015171 9606 + 10:135069-254637 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381591
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381591 2.889±0.00 5.386±0.00 9.337±1.99 6.692±2.01 3.930±0.00 4.583±2.64 7.166±4.12 7.955±4.63 5.045±1.38 0.891±0.00 5.766±5.22 3.879±0.45 9.891±5.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005694 IEA chromosome
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008270 ISS:IEA zinc ion binding
GO:0008283 TAS cell proliferation
GO:0016032 IEA viral process
GO:0016568 IEA chromatin modification
GO:0034243 ISS regulation of transcription elongation from RNA polymerase II promoter
GO:0035064 ISS methylated histone binding
GO:0043124 IMP negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0046329 IMP negative regulation of JNK cascade
GO:2001237 IMP negative regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110636 Zmynd11-001 protein_coding Mus_musculus 0 3070
ENSMUST00000110634 Zmynd11-002 protein_coding Mus_musculus 0 3068
ENSMUST00000062658 Zmynd11-003 protein_coding Mus_musculus 0 2300
ENSMUST00000110637 Zmynd11-005 protein_coding Mus_musculus 0 2300
ENSMUST00000110635 Zmynd11-006 protein_coding Mus_musculus 0 2135
ENSMUST00000110633 Zmynd11-007 protein_coding Mus_musculus 0 1515
ENSMUST00000110638 Zmynd11-004 protein_coding Mus_musculus 0 1332
ENSMUST00000119651 Gm13104-001 processed_pseudogene Mus_musculus 0 1234
ENSMUST00000117343 Gm13120-001 processed_pseudogene Mus_musculus 0 1201
ENSMUST00000154994 Zmynd11-012 protein_coding Mus_musculus 0 1083
ENSMUST00000137932 Zmynd11-008 retained_intron Mus_musculus 0 1040
ENSMUST00000152725 Zmynd11-009 protein_coding Mus_musculus 0 933
ENSMUST00000144642 Zmynd11-014 protein_coding Mus_musculus 0 817
ENSMUST00000140180 Zmynd11-017 processed_transcript Mus_musculus 0 678
ENSMUST00000130151 Zmynd11-016 protein_coding Mus_musculus 0 660
ENSMUST00000157035 Zmynd11-015 processed_transcript Mus_musculus 0 597
ENSMUST00000146039 Zmynd11-011 protein_coding Mus_musculus 0 503
ENSMUST00000128658 Zmynd11-010 protein_coding Mus_musculus 0 481
ENSMUST00000137813 Zmynd11-019 retained_intron Mus_musculus 0 403
ENSMUST00000138039 Zmynd11-018 retained_intron Mus_musculus 0 363
ENSDART00000105768 zmynd11-001 protein_coding Danio_rerio 0 302
ENSMUST00000146059 Zmynd11-013 protein_coding Mus_musculus 0 263

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