C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (glial high affinity glutamate transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381918 SLC1A3-201 ENSG00000079215 9606 + 5:36608329-36688332 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381918
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381918 5.600±0.00 0.386±0.00 0.040±0.00 99.666±0.00 7.276±0.00 0.405±0.00 13.239±0.00 1.950±0.00 0.894±0.38 1.851±0.00 5.386±0.00 1.109±0.81 2.100±0.00 1.022±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001504 TAS neurotransmitter uptake
GO:0005313 IDA L-glutamate transmembrane transporter activity
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0006835 IEA dicarboxylic acid transport
GO:0007268 TAS synaptic transmission
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0051938 IDA L-glutamate import
GO:0055085 TAS transmembrane transport
GO:0070779 IDA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005493 Slc1a3-001 protein_coding Mus_musculus 0 1642
ENSMUST00000125997 Slc1a3-006 retained_intron Mus_musculus 0 987
ENSMUST00000128879 Slc1a3-008 retained_intron Mus_musculus 0 462
ENSMUST00000129325 Slc1a3-007 retained_intron Mus_musculus 0 390
ENSMUST00000157065 Slc1a3-004 protein_coding Mus_musculus 0 388
ENSMUST00000153455 Slc1a3-003 processed_transcript Mus_musculus 0 388

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