C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 1 (glial high affinity glutamate transporter), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005493 Slc1a3-001 ENSMUSG00000005360 10090 - 15:8634124-8710764 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005493 10.057±2.28 4.086±1.43 1.062±0.05 26.525±9.50 8.108±1.97 0.386±0.25 0.646±0.28 1.270±0.18 0.084±0.07 5.933±1.49 0.224±0.15 5.277±1.84 0.713±0.73 0.171±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005313 IEA L-glutamate transmembrane transporter activity
GO:0005314 IDA high-affinity glutamate transmembrane transporter activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006536 IMP glutamate metabolic process
GO:0006537 IMP glutamate biosynthetic process
GO:0007605 IMP sensory perception of sound
GO:0009416 IMP response to light stimulus
GO:0009449 IMP gamma-aminobutyric acid biosynthetic process
GO:0009611 IMP response to wounding
GO:0009986 IDA cell surface
GO:0010035 ISO response to inorganic substance
GO:0015813 IDA L-glutamate transport
GO:0016021 IEA integral component of membrane
GO:0016595 IDA glutamate binding
GO:0016597 IDA amino acid binding
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0021545 IMP cranial nerve development
GO:0031223 IMP auditory behavior
GO:0042493 IMP response to drug
GO:0042995 IDA cell projection
GO:0043025 IDA neuronal cell body
GO:0043200 ISO response to amino acid
GO:0043205 IDA fibril
GO:0046677 IMP response to antibiotic
GO:0048667 IMP cell morphogenesis involved in neuron differentiation
GO:0050806 IMP positive regulation of synaptic transmission
GO:0050885 IMP neuromuscular process controlling balance
GO:0051938 IMP L-glutamate import
GO:0055085 IEA transmembrane transport
GO:0070779 IEA D-aspartate import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265113 SLC1A3-001 protein_coding Homo_sapiens 0 2327
ENST00000381918 SLC1A3-201 protein_coding Homo_sapiens 0 1642
ENST00000502864 SLC1A3-014 processed_transcript Homo_sapiens 0 285
ENST00000505202 SLC1A3-010 protein_coding Homo_sapiens 0 390
ENST00000505376 SLC1A3-015 processed_transcript Homo_sapiens 0 625
ENST00000509272 SLC1A3-013 processed_transcript Homo_sapiens 0 436
ENST00000513646 SLC1A3-011 protein_coding Homo_sapiens 0 390
ENST00000513903 SLC1A3-007 protein_coding Homo_sapiens 0 366
ENST00000514563 SLC1A3-012 processed_transcript Homo_sapiens 0 396
ENST00000612708 SLC1A3-202 protein_coding Homo_sapiens 0 996
ENST00000613445 SLC1A3-203 protein_coding Homo_sapiens 0 1696

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