C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cutaneous T-cell lymphoma-associated antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000391403 CTAGE1-001 ENSG00000212710 9606 - 18:22413603-22417915 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungMuscleOvaryPlacentaTestisENST00000391403
Transcript ID Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000391403 0.017±0.01 0.002±0.00 0.002±0.00 0.004±0.00 0.006±0.00 0.021±0.01 2.141±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XC CIL_0008XC_0001 VISTA 18:21894022-22494333
CIL_0008XC CIL_0008XC_0002 VISTA 18:21894333-22494345
CIL_0008XC CIL_0008XC_0003 VISTA 18:21894346-22494570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176464 Ctage5-011 protein_coding Mus_musculus 0 2010
ENSMUST00000175912 Ctage5-003 protein_coding Mus_musculus 0 1997
ENSMUST00000176752 Ctage5-004 nonsense_mediated_decay Mus_musculus 0 1969
ENSMUST00000170992 Ctage5-007 protein_coding Mus_musculus 0 1810
ENSMUST00000176892 Ctage5-002 protein_coding Mus_musculus 0 1810
ENSMUST00000069430 Ctage5-001 protein_coding Mus_musculus 0 1808
ENSMUST00000176322 Ctage5-008 protein_coding Mus_musculus 0 1707
ENSMUST00000176617 Ctage5-014 nonsense_mediated_decay Mus_musculus 0 1550
ENSMUST00000177162 Ctage5-012 protein_coding Mus_musculus 0 743
ENSMUST00000175877 Ctage5-010 protein_coding Mus_musculus 0 743
ENSMUST00000177225 Ctage5-006 protein_coding Mus_musculus 0 636
ENSMUST00000176336 Ctage5-013 nonsense_mediated_decay Mus_musculus 0 582
ENSMUST00000175685 Ctage5-020 retained_intron Mus_musculus 0 411
ENSMUST00000175837 Ctage5-021 nonsense_mediated_decay Mus_musculus 0 372
ENSMUST00000177222 Ctage5-018 retained_intron Mus_musculus 0 340

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