C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein U-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392006 HNRNPUL1-003 ENSG00000105323 9606 + 19:41264331-41307376 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392006
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392006 24.974±0.00 4.056±0.00 6.970±4.15 6.325±0.00 9.792±4.80 1.496±0.00 7.417±0.00 5.800±0.00 10.075±7.31 6.019±0.00 9.719±0.00 22.574±7.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0001 VISTA 19:41131081-41732986

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006396 IEA:TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0009615 IEA response to virus
GO:0010467 TAS gene expression
GO:0019899 IPI enzyme binding
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043765 Hnrnpul1-201 protein_coding Mus_musculus 0 3592
ENSMUST00000108401 Hnrnpul1-202 protein_coding Mus_musculus 0 1423
ENSMUST00000121559 Gm14767-001 processed_pseudogene Mus_musculus 1.4013e-45 189

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