C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin, beta, non-erythrocytic 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392023 SPTBN4-004 ENSG00000160460 9606 + 19:40530488-40560752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonKidneyPlacentaENST00000392023
Transcript ID Brain Colon Kidney Placenta
ENST00000392023 5.652±2.11 0.392±0.00 0.244±0.01 0.105±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002028 ISS regulation of sodium ion transport
GO:0003779 ISS actin binding
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI:IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005737 ISS cytoplasm
GO:0005829 TAS cytosol
GO:0005886 ISS plasma membrane
GO:0005912 ISS adherens junction
GO:0007016 TAS cytoskeletal anchoring at plasma membrane
GO:0007409 ISS axonogenesis
GO:0007411 TAS axon guidance
GO:0007605 ISS sensory perception of sound
GO:0007628 ISS adult walking behavior
GO:0008091 ISS spectrin
GO:0010459 ISS negative regulation of heart rate
GO:0016020 IDA membrane
GO:0016192 TAS vesicle-mediated transport
GO:0016363 ISS nuclear matrix
GO:0016605 ISS PML body
GO:0019226 ISS transmission of nerve impulse
GO:0019902 IPI phosphatase binding
GO:0021952 ISS central nervous system projection neuron axonogenesis
GO:0030506 ISS ankyrin binding
GO:0030507 ISS spectrin binding
GO:0033135 ISS regulation of peptidyl-serine phosphorylation
GO:0033268 ISS node of Ranvier
GO:0043025 ISS neuronal cell body
GO:0043194 ISS axon initial segment
GO:0043203 ISS axon hillock
GO:0045162 ISS clustering of voltage-gated sodium channels
GO:0051693 IEA actin filament capping
GO:0061337 ISS cardiac conduction
GO:0070062 IDA extracellular vesicular exosome
GO:0070852 ISS cell body fiber
GO:0090002 ISS establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108363 Sptbn4-004 protein_coding Mus_musculus 0 2597
ENSMUST00000108362 Sptbn4-006 protein_coding Mus_musculus 0 2549
ENSMUST00000172269 Sptbn4-201 protein_coding Mus_musculus 0 2547
ENSMUST00000011895 Sptbn4-001 protein_coding Mus_musculus 0 2547
ENSMUST00000108364 Sptbn4-005 protein_coding Mus_musculus 0 2545

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