C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CD247 molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392122 CD247-001 ENSG00000198821 9606 - 1:167430640-167518610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENST00000392122
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENST00000392122 3.082±0.00 0.404±0.00 0.263±0.16 0.676±0.00 0.785±0.40 0.570±0.17 0.614±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UH CIL_0008UH_0001 VISTA 1:167027717-167629809
CIL_00027W CIL_00027W_0002 CGP 1:167220829-167518610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004888 IEA transmembrane signaling receptor activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007166 IEA cell surface receptor signaling pathway
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016032 TAS viral process
GO:0031295 TAS T cell costimulation
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0042101 IDA T cell receptor complex
GO:0042802 IPI identical protein binding
GO:0042803 NAS protein homodimerization activity
GO:0045087 TAS innate immune response
GO:0050690 TAS regulation of defense response to virus by virus
GO:0050776 TAS regulation of immune response
GO:0050852 TAS T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000005907 Cd247-004 protein_coding Mus_musculus 0 483
ENSMUST00000178336 Cd247-201 protein_coding Mus_musculus 0 392
ENSMUST00000187313 Cd247-202 protein_coding Mus_musculus 0 392
ENSMUST00000027849 Cd247-003 protein_coding Mus_musculus 0 379
ENSMUST00000161559 Cd247-002 protein_coding Mus_musculus 0 366
ENSMUST00000086002 Cd247-005 nonsense_mediated_decay Mus_musculus 0 363
ENSMUST00000159070 Cd247-007 retained_intron Mus_musculus 0 250

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