C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ceramide synthase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392687 CERS6-002 ENSG00000172292 9606 + 2:168456249-168775134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverLungMusclePlacentaENST00000392687
Transcript ID Adrenal Bladder Brain Breast Heart Liver Lung Muscle Placenta
ENST00000392687 0.495±0.00 0.471±0.00 3.163±1.14 0.745±0.00 7.273±3.15 0.937±0.23 0.605±0.00 0.725±0.03 0.697±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063C CIL_00063C_0001 CGP 2:168455862-168865514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030148 TAS sphingolipid biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0046513 IEA ceramide biosynthetic process
GO:0050291 IEA sphingosine N-acyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028426 Cers6-001 protein_coding Mus_musculus 0 1895
ENSMUST00000176018 Cers6-006 protein_coding Mus_musculus 0 1637
ENSMUST00000175684 Cers6-005 retained_intron Mus_musculus 0 1236
ENSMUST00000141983 Cers6-002 retained_intron Mus_musculus 0 446
ENSMUST00000155748 Cers6-004 retained_intron Mus_musculus 0 396
ENSMUST00000183755 Cers6-007 retained_intron Mus_musculus 0 337
ENSMUST00000141498 Cers6-003 retained_intron Mus_musculus 0 259

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