C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: archain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392859 ARCN1-004 ENSG00000095139 9606 + 11:118572390-118600993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392859 21.743±0.00 9.548±0.00 3.809±0.00 10.823±4.16 11.893±0.18 12.197±2.90 6.922±1.57 5.251±0.00 7.659±0.00 10.089±0.47 3.312±2.33 21.777±9.32 29.323±0.00 20.952±8.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081E CIL_00081E_0001 VISTA 11:118137591-118740525

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005829 TAS cytosol
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030126 ISS COPI vesicle coat
GO:0030131 IEA clathrin adaptor complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034607 Arcn1-001 protein_coding Mus_musculus 0 2025
ENSMUST00000173278 Gm8750-001 processed_pseudogene Mus_musculus 0 1635
ENSMUST00000173427 Gm8752-001 processed_pseudogene Mus_musculus 0 1552
ENSMUST00000125164 Arcn1-003 processed_transcript Mus_musculus 0 828
ENSMUST00000150160 Arcn1-002 retained_intron Mus_musculus 0 828

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