C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: platelet derived growth factor D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393158 PDGFD-001 ENSG00000170962 9606 - 11:103907186-104164107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393158 11.731±0.00 2.011±0.00 0.687±0.00 0.760±0.00 3.446±2.25 3.285±1.72 2.425±0.76 1.325±0.79 1.502±1.19 0.473±0.00 0.472±0.00 7.147±6.21 1.980±0.90 3.623±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002I3 CIL_0002I3_0001 CGP 11:103907186-104164379

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005161 IEA platelet-derived growth factor receptor binding
GO:0005576 TAS extracellular region
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007275 IEA multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0016020 IEA membrane
GO:0048008 IEA platelet-derived growth factor receptor signaling pathway
GO:0050730 IEA regulation of peptidyl-tyrosine phosphorylation
GO:0051781 IEA positive regulation of cell division
GO:0070062 IDA extracellular vesicular exosome
GO:0071230 IEA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168039 Pdgfd-202 protein_coding Mus_musculus 0 1242
ENSMUST00000058692 Pdgfd-201 protein_coding Mus_musculus 0 1131

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