C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393387 PHF3-201 ENSG00000118482 9606 + 6:63646526-63714509 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393387
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393387 8.623±0.00 4.764±0.00 2.817±0.00 5.738±0.92 6.651±1.19 7.419±5.35 3.415±1.75 4.484±0.66 4.650±2.55 6.724±1.06 6.457±5.81 6.505±1.51 3.664±1.62 13.989±0.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007275 NAS multicellular organismal development
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088310 Phf3-201 protein_coding Mus_musculus 0 4327
ENSMUST00000186733 Phf3-003 protein_coding Mus_musculus 0 4327
ENSMUST00000186105 Phf3-002 retained_intron Mus_musculus 0 1088
ENSMUST00000191329 Phf3-010 protein_coding Mus_musculus 0 1044
ENSMUST00000191245 Phf3-001 retained_intron Mus_musculus 0 929
ENSMUST00000191064 Phf3-006 nonsense_mediated_decay Mus_musculus 0 732
ENSMUST00000185521 Phf3-011 retained_intron Mus_musculus 0 523
ENSMUST00000188780 Phf3-007 protein_coding Mus_musculus 0 488
ENSMUST00000190190 Phf3-009 retained_intron Mus_musculus 0 372
ENSMUST00000187968 Phf3-012 protein_coding Mus_musculus 0 333
ENSMUST00000117483 Gm13378-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000188847 Phf3-004 retained_intron Mus_musculus 3e-40 172
ENSMUST00000187600 Phf3-008 processed_transcript Mus_musculus 1e-39 171

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