C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393593 IRF2-001 ENSG00000168310 9606 - 4:184387713-184474580 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393593 13.802±0.00 9.781±0.00 5.801±0.00 5.712±0.84 7.900±0.09 10.979±3.96 3.406±0.37 7.866±4.59 6.644±2.30 15.021±4.89 9.820±0.00 8.960±2.01 10.119±2.28 5.524±3.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094W CIL_00094W_0001 VISTA 4:184083896-184687060
CIL_0000GS CIL_0000GS_0002 CGP 4:184088706-184474580
CIL_00097G CIL_00097G_0001 VISTA 4:184147184-184748475
CIL_0000GX CIL_0000GX_0002 CGP 4:184387713-184649509

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 TAS negative regulation of transcription from RNA polymerase II promoter
GO:0000975 IEA regulatory region DNA binding
GO:0003677 IDA DNA binding
GO:0003700 IEA:IMP sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA:IMP regulation of transcription, DNA-templated
GO:0007596 TAS blood coagulation
GO:0008283 TAS cell proliferation
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0060333 TAS interferon-gamma-mediated signaling pathway
GO:0060337 TAS type I interferon signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034041 Irf2-201 protein_coding Mus_musculus 0 2089

Loading