C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: succinate-CoA ligase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393868 SUCLG1-001 ENSG00000163541 9606 - 2:84423523-84459480 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000393868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000393868 29.392±0.00 25.132±0.00 26.407±0.00 19.520±10.77 36.364±31.11 32.880±8.80 58.327±40.33 35.128±23.07 26.210±18.59 20.603±0.00 28.768±6.91 34.927±17.53 38.290±6.45 31.957±3.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004I9 CIL_0004I9_0002 CGP 2:80288351-84460045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003878 IEA ATP citrate synthase activity
GO:0004775 IEA succinate-CoA ligase (ADP-forming) activity
GO:0004776 IEA succinate-CoA ligase (GDP-forming) activity
GO:0005525 IEA GTP binding
GO:0005739 TAS mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0005759 TAS mitochondrial matrix
GO:0006099 IEA tricarboxylic acid cycle
GO:0006104 IEA succinyl-CoA metabolic process
GO:0006105 IEA succinate metabolic process
GO:0008152 IEA metabolic process
GO:0019003 IEA GDP binding
GO:0043234 IEA protein complex
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045244 IEA succinate-CoA ligase complex (GDP-forming)
GO:0046982 IEA protein heterodimerization activity
GO:0048037 IEA cofactor binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064740 Suclg1-001 protein_coding Mus_musculus 0 1205
ENSMUST00000123159 Suclg1-003 nonsense_mediated_decay Mus_musculus 0 536
ENSMUST00000173409 Suclg1-005 retained_intron Mus_musculus 0 425

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