C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor-like 13B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394222 ARL13B-005 ENSG00000169379 9606 + 3:93980149-94054154 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungOvaryENST00000394222
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Ovary
ENST00000394222 1.057±0.00 0.902±0.20 0.274±0.00 0.966±0.15 0.340±0.00 1.475±0.00 1.875±0.00 0.634±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B0 CIL_0003B0_0001 CGP 3:93980139-94055668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005929 ISS cilium
GO:0006886 IEA intracellular protein transport
GO:0007224 ISS smoothened signaling pathway
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007368 IEA determination of left/right symmetry
GO:0009953 IEA dorsal/ventral pattern formation
GO:0021532 ISS neural tube patterning
GO:0021830 ISS interneuron migration from the subpallium to the cortex
GO:0021943 ISS formation of radial glial scaffolds
GO:0035058 ISS nonmotile primary cilium assembly
GO:0042384 ISS cilium assembly
GO:0060170 ISS ciliary membrane
GO:0070986 IEA left/right axis specification
GO:0072372 ISS primary cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000089289 Arl13b-001 protein_coding Mus_musculus 0 1280
ENSMUST00000132902 Arl13b-002 retained_intron Mus_musculus 0 540

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