C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000394689 BRD7-002 ENSG00000166164 9606 - 16:50319030-50368779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000394689
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000394689 6.574±0.00 4.805±0.00 1.681±0.00 4.956±1.45 5.023±1.55 6.729±4.41 3.252±1.81 5.596±4.01 3.656±0.04 4.562±2.14 4.633±3.71 8.991±3.42 15.839±2.55 21.376±0.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OK CIL_0000OK_0001 CGP 16:50152918-50318135
CIL_000787 CIL_000787_0001 CGP 16:50246137-50368934
CIL_0003PU CIL_0003PU_0001 CGP 16:50313487-50640739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003713 IDA transcription coactivator activity
GO:0003714 ISS transcription corepressor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0008134 IDA transcription factor binding
GO:0008285 IDA negative regulation of cell proliferation
GO:0016055 IEA Wnt signaling pathway
GO:0035066 IDA positive regulation of histone acetylation
GO:0042393 IDA histone binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0070577 IDA lysine-acetylated histone binding
GO:2000134 IDA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034085 Brd7-001 protein_coding Mus_musculus 0 2436
ENSMUST00000135471 Brd7-003 processed_transcript Mus_musculus 0 595

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