C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain containing 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034085 Brd7-001 ENSMUSG00000031660 10090 - 8:88331059-88362194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034085
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034085 1.800±0.37 1.774±0.26 6.066±0.58 9.300±4.81 1.461±0.48 1.482±0.68 1.769±0.18 1.708±0.23 4.950±5.29 4.357±1.28 4.925±0.81 3.370±2.49 7.265±3.96 2.514±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000787 CIL_000787_0002 CGP 8:88272403-88362194
CIL_0003PU CIL_0003PU_0002 CGP 8:88331039-88594887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 ISS p53 binding
GO:0003713 ISS transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IPI nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0007049 IEA cell cycle
GO:0008134 ISA transcription factor binding
GO:0008285 ISS negative regulation of cell proliferation
GO:0016055 IEA Wnt signaling pathway
GO:0035066 ISS positive regulation of histone acetylation
GO:0042393 IEA histone binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0070577 ISS lysine-acetylated histone binding
GO:2000134 ISS negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299197 BRD7P5-001 processed_pseudogene Homo_sapiens 0 983
ENST00000394688 BRD7-001 protein_coding Homo_sapiens 0 2682
ENST00000394689 BRD7-002 protein_coding Homo_sapiens 0 2436
ENST00000401491 BRD7-003 processed_transcript Homo_sapiens 0 1051
ENST00000406170 BRD7P4-001 processed_pseudogene Homo_sapiens 0 1404
ENST00000466133 BRD7P2-001 processed_pseudogene Homo_sapiens 0 2106
ENST00000467963 BRD9-001 protein_coding Homo_sapiens 0.00004 55
ENST00000469424 BRD7P3-001 processed_pseudogene Homo_sapiens 0 1118
ENST00000475877 BRD7-004 processed_transcript Homo_sapiens 0 833
ENST00000495265 BRD9-002 nonsense_mediated_decay Homo_sapiens 0.00005 55
ENST00000567826 BRD7-006 retained_intron Homo_sapiens 0 1038

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