C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: poly(rC) binding protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395014 PCBP4-202 ENSG00000090097 9606 - 3:51958137-51962892 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartMuscleTestisENST00000395014
Transcript ID Brain Heart Muscle Testis
ENST00000395014 37.887±0.00 14.986±0.00 24.792±15.42 14.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087C CIL_00087C_0001 VISTA 3:51705330-52307529
CIL_0008NT CIL_0008NT_0001 VISTA 3:51738719-52342071

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024260 Pcbp4-001 protein_coding Mus_musculus 0 1629
ENSMUST00000185779 Pcbp4-005 protein_coding Mus_musculus 0 848
ENSMUST00000185507 Pcbp4-010 nonsense_mediated_decay Mus_musculus 0 763
ENSMUST00000190428 Pcbp4-013 protein_coding Mus_musculus 0 702
ENSMUST00000188396 Pcbp4-016 protein_coding Mus_musculus 0 534
ENSMUST00000185874 Pcbp4-003 protein_coding Mus_musculus 0 531
ENSMUST00000190430 Pcbp4-008 protein_coding Mus_musculus 0 507
ENSMUST00000188448 Pcbp4-012 retained_intron Mus_musculus 0 333
ENSMUST00000189882 Pcbp4-015 retained_intron Mus_musculus 0 326
ENSMUST00000186519 Pcbp4-014 retained_intron Mus_musculus 0 231

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