C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras association (RalGDS/AF-6) domain family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395117 RASSF1-004 ENSG00000068028 9606 - 3:50329788-50340841 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; MuscleENST00000395117
Transcript ID Muscle
ENST00000395117 1.622±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0001 VISTA 3:50299047-50902727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0005886 IDA plasma membrane
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007050 IMP cell cycle arrest
GO:0007265 IDA Ras protein signal transduction
GO:0008270 TAS zinc ion binding
GO:0015630 IDA microtubule cytoskeleton
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0042802 IPI identical protein binding
GO:0047485 IPI protein N-terminus binding
GO:0050821 IDA protein stabilization
GO:0071157 IDA negative regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156198 Rassf1-003 nonsense_mediated_decay Mus_musculus 0 1066
ENSMUST00000144129 Rassf1-006 retained_intron Mus_musculus 0 813
ENSMUST00000121635 Rassf1-005 protein_coding Mus_musculus 0 813
ENSMUST00000010211 Rassf1-004 protein_coding Mus_musculus 0 813
ENSMUST00000122225 Rassf1-002 protein_coding Mus_musculus 0 813
ENSMUST00000093786 Rassf1-001 protein_coding Mus_musculus 0 813
ENSMUST00000125386 Rassf1-008 retained_intron Mus_musculus 0 411
ENSMUST00000129320 Rassf1-007 retained_intron Mus_musculus 0 270
ENSMUST00000125080 Rassf1-009 retained_intron Mus_musculus 0 263

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