C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395211 TMOD1-201 ENSG00000136842 9606 + 9:97501180-97601741 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000395211
Transcript ID Breast
ENST00000395211 1.216±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007HJ CIL_0007HJ_0002 CGP 9:97411950-97601748
CIL_0002JE CIL_0002JE_0001 CGP 9:97501180-97633575

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IEA tropomyosin binding
GO:0005829 TAS cytosol
GO:0008180 IDA COP9 signalosome
GO:0030049 TAS muscle filament sliding
GO:0051694 IEA pointed-end actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107773 Tmod1-001 protein_coding Mus_musculus 0 1506
ENSMUST00000128689 Tmod1-003 processed_transcript Mus_musculus 0 976
ENSMUST00000156200 Tmod1-002 protein_coding Mus_musculus 0 444

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