C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trichorhinophalangeal syndrome I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395715 TRPS1-001 ENSG00000104447 9606 - 8:115408496-115669001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartLiverOvaryPlacentaTestisENST00000395715
Transcript ID Adrenal Bladder Brain Breast Heart Liver Ovary Placenta Testis
ENST00000395715 0.210±0.00 1.820±0.00 1.149±0.84 1.098±0.18 0.323±0.25 2.385±0.00 0.881±0.52 0.099±0.00 0.560±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005RP CIL_0005RP_0001 CGP 8:112222928-115809673
CIL_00097I CIL_00097I_0001 VISTA 8:115118467-115720299
CIL_0005RQ CIL_0005RQ_0001 CGP 8:115408496-116766925

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001501 TAS skeletal system development
GO:0002062 IEA chondrocyte differentiation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006607 TAS NLS-bearing protein import into nucleus
GO:0007178 IEA transmembrane receptor protein serine/threonine kinase signaling pathway
GO:0008270 IEA zinc ion binding
GO:0031063 IEA regulation of histone deacetylation
GO:0032330 IEA:ISS regulation of chondrocyte differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:1902043 IEA positive regulation of extrinsic apoptotic signaling pathway via death domain receptors

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165201 Trps1-001 protein_coding Mus_musculus 0 8191
ENSMUST00000183757 Trps1-003 protein_coding Mus_musculus 0 7723
ENSMUST00000184458 Trps1-002 protein_coding Mus_musculus 0 6421
ENSMUST00000077935 Trps1-201 protein_coding Mus_musculus 0 5574
ENSMUST00000184885 Trps1-005 protein_coding Mus_musculus 0 2981
ENSMUST00000183997 Trps1-004 protein_coding Mus_musculus 0 2159
ENSMUST00000185183 Trps1-007 protein_coding Mus_musculus 0 1068
ENSDART00000098145 trps1-202 protein_coding Danio_rerio 0.000000000003 81
ENSDART00000056809 trps1-201 protein_coding Danio_rerio 0.00000002 68

Loading