C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light chain 3, alkali; ventricular, skeletal, slow
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395869 MYL3-002 ENSG00000160808 9606 - 3:46857872-46863442 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000395869
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000395869 0.745±0.00 0.207±0.00 1.026±0.97 6.091±0.00 412.088±346.83 1.852±0.00 58.594±47.41 0.332±0.21 4.168±3.59 1.624±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002026 IMP regulation of the force of heart contraction
GO:0003774 IEA motor activity
GO:0003785 IDA actin monomer binding
GO:0005509 IEA calcium ion binding
GO:0005829 TAS cytosol
GO:0005859 TAS muscle myosin complex
GO:0006942 IMP regulation of striated muscle contraction
GO:0007519 IEA skeletal muscle tissue development
GO:0008152 IEA metabolic process
GO:0008307 TAS structural constituent of muscle
GO:0016459 IEA myosin complex
GO:0030017 TAS sarcomere
GO:0030049 TAS muscle filament sliding
GO:0031672 IDA A band
GO:0031674 IDA I band
GO:0032038 NAS myosin II heavy chain binding
GO:0032781 ISS positive regulation of ATPase activity
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis
GO:0060048 IMP cardiac muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079784 Myl3-001 protein_coding Mus_musculus 0 719
ENSMUST00000124267 Myl3-002 processed_transcript Mus_musculus 0 634
ENSMUST00000136695 Myl3-003 processed_transcript Mus_musculus 0 632
ENSMUST00000106956 Myl4-004 protein_coding Mus_musculus 0 337
ENSMUST00000106957 Myl4-003 protein_coding Mus_musculus 0 337
ENSMUST00000153761 Myl4-007 protein_coding Mus_musculus 0 337
ENSMUST00000018800 Myl4-001 protein_coding Mus_musculus 0 337
ENSMUST00000123074 Myl4-006 retained_intron Mus_musculus 0 335
ENSMUST00000130588 Myl4-005 nonsense_mediated_decay Mus_musculus 0 291
ENSMUST00000119429 Myl1-002 protein_coding Mus_musculus 0 230
ENSMUST00000186202 Myl1-007 protein_coding Mus_musculus 0 230
ENSMUST00000150542 Myl1-003 processed_transcript Mus_musculus 0 224
ENSMUST00000027151 Myl1-001 protein_coding Mus_musculus 0 224
ENSMUST00000155271 Myl4-002 retained_intron Mus_musculus 0 219
ENSMUST00000120415 Myl1-004 protein_coding Mus_musculus 0 206

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