C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin, light polypeptide 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018800 Myl4-001 ENSMUSG00000061086 10090 + 11:104550663-104587215 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverOvaryTestisENSMUST00000018800
Transcript ID Breast Kidney Liver Ovary Testis
ENSMUST00000018800 0.274±0.00 0.263±0.00 0.122±0.00 2.116±0.98 17.395±5.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HD CIL_0008HD_0002 VISTA 11:104342398-104943585
CIL_0002QR CIL_0002QR_0002 CGP 11:104502745-104595753
CIL_0004WN CIL_0004WN_0002 CGP 11:104550663-104670476

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292327 MYL3-001 protein_coding Homo_sapiens 0 337
ENST00000354968 MYL4-201 protein_coding Homo_sapiens 0 686
ENST00000393450 MYL4-001 protein_coding Homo_sapiens 0 686
ENST00000395869 MYL3-002 protein_coding Homo_sapiens 0 337
ENST00000405661 MYL6B-002 retained_intron Homo_sapiens 1e-27 128
ENST00000536623 MYL4-004 protein_coding Homo_sapiens 0 665
ENST00000549178 MYL6B-006 retained_intron Homo_sapiens 4.99997e-41 172
ENST00000550152 MYL6B-005 processed_transcript Homo_sapiens 2e-27 126
ENST00000550443 MYL6B-001 protein_coding Homo_sapiens 4.99997e-41 172
ENST00000552568 MYL6B-011 protein_coding Homo_sapiens 0.000000000000001 88
ENST00000553066 MYL6B-003 protein_coding Homo_sapiens 5.99994e-41 172
ENST00000570671 MYL4-006 protein_coding Homo_sapiens 0 399
ENST00000570772 MYL4-008 nonsense_mediated_decay Homo_sapiens 0 409
ENST00000571981 MYL4-007 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000572303 MYL4-005 protein_coding Homo_sapiens 0 342
ENST00000572316 MYL4-002 protein_coding Homo_sapiens 0 686
ENST00000573747 MYL4-009 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000576874 MYL4-003 protein_coding Homo_sapiens 0 558

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