C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: atrophin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396684 ATN1-001 ENSG00000111676 9606 + 12:6928313-6942263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396684
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396684 60.148±0.00 34.919±0.00 67.449±0.00 45.972±0.00 36.091±34.92 15.446±14.81 13.343±11.86 2.902±2.40 64.190±0.00 41.541±0.00 51.996±34.68 23.462±5.68 22.353±15.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007417 TAS central nervous system development
GO:0016363 IDA nuclear matrix
GO:0019904 IPI protein domain specific binding
GO:0030054 IEA cell junction
GO:0051402 IDA neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088357 Atn1-001 protein_coding Mus_musculus 0 2972
ENSMUST00000129411 Atn1-003 nonsense_mediated_decay Mus_musculus 0 2719
ENSMUST00000146872 Atn1-002 protein_coding Mus_musculus 0 896
ENSMUST00000133577 Atn1-004 processed_transcript Mus_musculus 0 340

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