C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397149 SMU1-001 ENSG00000122692 9606 - 9:33041764-33076659 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000397149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000397149 6.779±0.00 6.935±0.00 2.572±0.00 7.447±0.45 6.245±0.02 4.018±0.82 2.522±1.23 4.609±0.96 4.956±2.31 4.611±0.30 4.314±1.07 6.248±1.86 3.540±0.92 6.044±2.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005V0 CIL_0005V0_0002 CGP 9:33025211-33076659
CIL_00061E CIL_00061E_0001 CGP 9:33041764-33167356

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030117 Smu1-001 protein_coding Mus_musculus 0 2137
ENSMUST00000130503 Smu1-002 processed_transcript Mus_musculus 0 1413
ENSMUST00000150574 Smu1-003 processed_transcript Mus_musculus 0 569
ENSMUST00000137415 Smu1-004 processed_transcript Mus_musculus 2.00386e-43 183
ENSMUST00000048099 Tmem194-001 protein_coding Mus_musculus 0.0005 53

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