C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030117 Smu1-001 ENSMUSG00000028409 10090 - 4:40736542-40757923 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030117 21.103±3.40 10.231±1.21 22.681±11.79 27.474±9.36 16.588±2.77 12.885±2.20 10.322±0.94 19.114±2.06 23.921±9.83 17.962±1.36 13.331±2.64 25.181±3.31 41.259±10.63 14.874±3.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061D CIL_00061D_0002 CGP 4:40682382-40737149
CIL_0005V0 CIL_0005V0_0003 CGP 4:40722150-40757923
CIL_00061E CIL_00061E_0002 CGP 4:40736542-40854005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000098346 smu1a-201 protein_coding Danio_rerio 0 1201
ENST00000379752 RP11-110J1.2-001 processed_pseudogene Homo_sapiens 0 1940
ENST00000397149 SMU1-001 protein_coding Homo_sapiens 0 2137

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