C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397873 THOC5-004 ENSG00000100296 9606 - 22:29508358-29553766 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMusclePlacentaTestisENST00000397873
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Placenta Testis
ENST00000397873 6.861±0.00 4.798±0.00 3.561±0.32 7.623±0.00 2.542±0.75 2.722±0.00 4.421±0.57 8.270±0.00 4.427±2.28 10.167±0.94

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0000347 IDA THO complex
GO:0000445 IDA THO complex part of transcription export complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006406 IDA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0030224 IDA monocyte differentiation
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:0060215 ISS primitive hemopoiesis
GO:2000002 IMP negative regulation of DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038237 Thoc5-201 protein_coding Mus_musculus 0 2676
ENSMUST00000101615 Thoc5-001 protein_coding Mus_musculus 0 2390
ENSMUST00000144371 Thoc5-004 processed_transcript Mus_musculus 0 640
ENSMUST00000142543 Thoc5-002 protein_coding Mus_musculus 0 638
ENSMUST00000155872 Thoc5-005 processed_transcript Mus_musculus 0 610
ENSMUST00000148117 Thoc5-003 processed_transcript Mus_musculus 0 315

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