C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038237 Thoc5-201 ENSMUSG00000034274 10090 + 11:4895343-4928865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038237
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038237 9.224±1.20 4.879±2.45 11.075±0.89 27.506±11.47 5.657±1.82 6.438±1.88 1.920±0.85 7.766±0.35 9.224±4.93 7.620±0.67 1.382±0.64 8.984±6.02 9.823±4.95 33.758±7.66

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IEA transcription export complex
GO:0000347 IEA THO complex
GO:0000445 IEA THO complex part of transcription export complex
GO:0000902 IMP cell morphogenesis
GO:0001824 IMP blastocyst development
GO:0003729 IMP mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006406 IEA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0010468 IMP regulation of gene expression
GO:0010793 IMP regulation of mRNA export from nucleus
GO:0017145 IMP stem cell division
GO:0030224 ISS monocyte differentiation
GO:0032786 ISS positive regulation of DNA-templated transcription, elongation
GO:0045650 IDA negative regulation of macrophage differentiation
GO:0046784 IEA viral mRNA export from host cell nucleus
GO:0060215 IMP primitive hemopoiesis
GO:2000002 ISS negative regulation of DNA damage checkpoint
GO:2000035 IMP regulation of stem cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358079 THOC5-005 nonsense_mediated_decay Homo_sapiens 0 1531
ENST00000397871 THOC5-201 protein_coding Homo_sapiens 0 2702
ENST00000397872 THOC5-202 protein_coding Homo_sapiens 0 2702
ENST00000397873 THOC5-004 protein_coding Homo_sapiens 0 2676
ENST00000414902 THOC5-012 nonsense_mediated_decay Homo_sapiens 0 217
ENST00000418021 THOC5-009 protein_coding Homo_sapiens 0 340
ENST00000428374 THOC5-008 protein_coding Homo_sapiens 0 619
ENST00000440771 THOC5-010 protein_coding Homo_sapiens 0 857
ENST00000442555 THOC5-002 nonsense_mediated_decay Homo_sapiens 0 1480
ENST00000443089 THOC5-015 protein_coding Homo_sapiens 0 569
ENST00000455450 THOC5-013 protein_coding Homo_sapiens 0 632
ENST00000475187 THOC5-007 retained_intron Homo_sapiens 0 917
ENST00000484924 THOC5-016 retained_intron Homo_sapiens 0 726
ENST00000488052 THOC5-014 retained_intron Homo_sapiens 0 326
ENST00000490103 THOC5-001 protein_coding Homo_sapiens 0 2702
ENST00000492707 THOC5-003 retained_intron Homo_sapiens 0 649

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