C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC24 family member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398844 SEC24A-001 ENSG00000113615 9606 + 5:134648789-134727823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000398844
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000398844 4.722±0.00 2.005±0.00 1.151±0.00 2.149±0.42 4.552±0.00 3.864±0.85 1.813±0.00 6.321±0.64 5.378±1.67 3.220±0.26 2.964±0.82 2.606±0.86 3.375±1.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089W CIL_00089W_0001 VISTA 5:134136326-134739629
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_00062X CIL_00062X_0002 CGP 5:134601144-134727823
CIL_00062W CIL_00062W_0002 CGP 5:134648789-134752160

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0003674 ND molecular_function
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006888 TAS:IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030127 IEA COPII vesicle coat
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0045714 IEA regulation of low-density lipoprotein particle receptor biosynthetic process
GO:0048208 TAS COPII vesicle coating
GO:0050714 IEA positive regulation of protein secretion
GO:0061024 TAS membrane organization
GO:2000189 IEA positive regulation of cholesterol homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109097 Sec24a-001 protein_coding Mus_musculus 0 3899
ENSMUST00000038210 Sec24a-006 protein_coding Mus_musculus 0 3886
ENSMUST00000064297 Sec24a-004 protein_coding Mus_musculus 0 1869
ENSMUST00000109092 Sec24a-005 protein_coding Mus_musculus 0 1857
ENSMUST00000147255 Sec24a-003 retained_intron Mus_musculus 0 1375
ENSMUST00000154325 Sec24a-002 retained_intron Mus_musculus 0 580

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